Backpay helps you correct pay changes that should have started earlier - without reopening historic pay runs.
When you backdate a salary change or a recurring pay element (like an allowance or deduction), the system:
checks what the employee was paid in the affected closed pay runs
recalculates what they should have been paid
calculates the difference
adds a single, one-off backpay adjustment into the next open / upcoming pay run
Outcome: no spreadsheets, no manual reconciliation, no reopening closed pay runs—just a clear adjustment added to the next payment.
Contents
- When Backpay is useful and what you'll see as a result
- How Backpay works
- Example: scenario
- Applying Backpay
- Key rules and expectations
- Limitations
- What happens in complex scenarios
- Summary
When Backpay is useful
Use Backpay when:
a salary change was agreed earlier but entered late
an allowance/deduction should have started earlier
you need to correct underpayments/overpayments without touching past pay runs
you’re applying a retrospective salary increase
What you’ll see as the result
When Backpay is applied successfully, you’ll see one (or a small number of) new line(s) in the next pay run, for example:
Backpay Salary (01/08/2025 – 31/10/2025)
Backpay Car Allowance (date range)
Backpay Deduction Adjustment (date range)
These lines represent the net difference between what was paid and what should have been paid for the affected period.
| Important: The system will automatically recalculate tax/NI based on the total paid in the current pay run (including the backpay line). |
How Backpay works
Backpay always follows the same core logic:
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Step 1: Identify the period to correct
Backpay starts from the effective date of your change (e.g., “effective from 1 Aug”) -
Step 2: Look at closed pay runs in that period
The system checks closed pay runs that fall within the backpay period -
Step 3: Compare “what happened” vs “what should have happened”
For each affected pay run, the system compares:original calculation (what the employee was actually paid in that pay run) vs
recalculation (what they should have been paid with the updated salary/element)
Step 4: Calculate the difference
The difference is calculated per pay run and then totalledStep 5: Add one adjustment into the next pay run
Instead of changing the past, the system adds the total difference as a single adjustment to the next open/next pay run
Outcome: Past pay runs stay closed and auditable; corrections happen cleanly in the next pay run.
Simple worked example
To set the scene and demonstrate what backpay is in the most basic terms, here is an example:
Scenario
It’s November 2025
Employee salary is £30,000/year (£2,500/month)
A salary increase should have applied from 1 Aug 2025
The updated salary should have been £33,000/year (£2,750/month)
Underpayment occurred across Aug, Sep, Oct
What Backpay does
For every pay run between the 1st Aug and Nov:
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Per month:
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Total Backpay: Add the total (3 x £250 = £750) to the Nov pay run (this will automatically recalculate the tax/ni totals)
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The November pay run gets a Backpay Salary line for £750.
Applying Backpay
Click on each step to learn more:
1) Company setup
- Navigate to Company Setup > Pay Elements
- Edit the relevant pay elements (including salary)
- Select Allow backpay
Save
- Salary backpay is automatically enabled as long as the Backpay feature is active for your organisation
Exceptions
- You can only apply backpay to the latest salary or employee pay element (on or after the effective from date)
- Only the “Amount” type company pay elements can be used for backpay,
- The backpay must be done on an already paid element (you cannot backpay something that hasn’t been paid in a previous pay run)
- Working pattern is not compared if you update the current salary (without changing the amount) e.g. updating the salary of an employee working Mon-Fri to Mon-Weds will result in no backpay (even though the salary has effectively increased) this also applies to all absence payments
- Occupational Pay Scheme changes always use the latest scheme, not the scheme that was active at that point in time
- SSP will not be recalculated when running backpay
2) Salary Backpay
What you do
Edit the employee’s salary record
Enable Create backpay for salary
Save
What happens next
The system calculates the difference across applicable closed pay runs
Adds a backpay adjustment line to the next pay run
3) Backpay for Employee Pay Elements (allowances/deductions)
What you do
When creating or editing an employee pay element:
enable Apply backpay
Save your changes
What happens next
The system checks which closed pay runs are impacted
calculates the difference for that pay element
adds a one-off adjustment line into the next pay run
Key rules and expectations
Backpay works best when…
- there are closed pay runs covering the period you need to correct
- the item you’re correcting has already been included historically (for salary, it must have been paid; for pay elements there must be a pay run covering the time period)
Backpay is intentionally “tidy”
To keep payslips and payroll reporting clean:
- backpay is posted as an aggregated adjustment
- quantity-based calculations are flattened into a single adjustment line (Quantity = 1, Amount = total difference)
Outcome: your pay run stays readable and easy to explain.
Limitations
To avoid surprises, note the following:
- Only the latest salary or pay element can have backpay applied (from the effective date onwards)
- Only Amount-type Company Pay Elements support backpay
- You can’t backpay an item that has never been paid historically (for salary and “already paid” elements)
- If you change working pattern without changing salary amount, the system won’t create backpay just because the value “effectively” changed
- SSP isn’t recalculated when backpay is run
Occupational pay scheme corrections use the latest scheme rules, not the scheme that was active at the time.
What happens in complex scenarios (eg absence pay)
If salary impacts other derived lines (like absence deductions or occupational sick pay), Backpay may create multiple adjustment lines - because the system corrects the whole set of pay outcomes for those periods.
Outcome: the correction reflects what payroll should have been, not just the headline salary difference.
Summary
Backpay is a safe and clean way to correct the past without changing the past.
It helps you:
- apply backdated salary or pay element changes correctly
- reduce manual calculations and admin time
- keep historic pay runs closed and auditable
- pay employees the right amount in the next run - with statutory recalculations handled automatically
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